SE2850198

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9203
  • Sorghum bicolor
  • SE2850198
  • PIF/harbinger
  • To11
  • chromosome_2:690704-690948
  • TAA
  • AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CCAAAAAAAATT       TTTCT      CCATCACATCGAATCTTACGACACATGCATAGAGCATTAAATATAGATAAAAATAACTAATTGCATAATTTGCCTGT
  AGGCCTTGTTTAGTTT            GCAAAAT     AGATTT                                                                             
  ||||||||||||||||            |||||||     ||||||                                                                              
  TCCGGAACAAATCAAG            TGTTTTA     CTGTGA                                                                             
AA                -ATTTAAAAAAC       ----T      CATCGTGAAAATAAATATAAACTGTTTATAACAAGTCAATACCTAATTGATCCGAGTTTTCTAAGCAGAGCATTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3