Plant MITE

SE2850201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9206
Sorghum bicolor
SE2850201
PIF/harbinger
To1
chromosome_2:71809051-71809288
TTA
AGGCCTTGTTTAGTTGGCAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT               G       --     -  TTTTGGCTACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTCAAAAGATTTATCTCACAA
  AGGCCTTGTTTAGTT GCAAAAA  CTTTG GT                                                                                     
  ||||||||||||||| |||||||  ||||| ||                                                                                     A
  TCCGGAACAAATCAA CGTTTTT  AAGTT TA                                                                                     
AT               G       AA     T  AGGGGCAGTGTAGCTTAGAAACCAGCGTACGTACCTCGTAATTTATATCTATTTTTATTTTTGATTGACATGTCAAATGGACATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850201

TTAGGCCTTGTTTAGTTGGCAAAAACTTTGGTTTTTGGCTACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTCAAAAGATTTATCTCACAAATTACAGGTAAACTGTACAGTTAGTTTTTATTTTTATCTATATTTAATGCTCCATGCATGCGACCAAAGATTCGATGTGACGGGGAATTTTGAAAATTTTTGCGAACTAAACAAGGCCTTA

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