SE2830205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9210
  • Sorghum bicolor
  • SE2830205
  • hAT
  • Hat19
  • chromosome_10:11650034-11650680
  • GATACACC
  • CCAGGGCCGTCTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GATACAC               TAAT      --    CTTGTGTAAGCAAAAAGGTAAGGGCCCATCAAATATTTATTTTATATGTCAAATATATAAAATATATAATACAACTAAAAAGAATTAATTTGTACCATATGTTTTAGTTTATAAAAGGCAATTATAGTACAACAAATAAATAAATAGAATAGAATTAGAAATTTAGAACCCTATCACGGAATACTAATAACAAAATTGGTGAAGTCTCGATCAGCAATGCCCTTACTCTTCCTGCTCCAGTGTCTAGTAGTGACATCGTGTGCGGACGCGTGGTGTTAGCGTGTCA
       CCAGGGCCGTCTCTA    TTTGAG  GGCC                                                                                                                                                                                                                                                                                              
       |||||||||||||||    ||||||  ||||                                                                                                                                                                                                                                                                                              T
       GGTCCCGGCAGAGAT    CACCCG  GGCC                                                                                                                                                                                                                                                                                              
CCACATA               CCCC      TC    ACGCTGCCGGCCCCCGGGTGCCGCGATTCCCCGGATATTTATATATACATCATGTATATTATGAATCATATATCTAAATAGATTAAAAAACCTCCGAATATGTTTGTGATGTCTTTAAATAGTTAATTAAAATTTTTCTTTAAGTAATTAGTCGTGCAGTAGGTGTAGGTGGATAACGATCACAACGAAGTATAAGAGCGAACTAGCTAATCAACTCGTTTAGTTTCAAGGAGAAATAGCAGAAGAGCAGGATAACGGGTTAGCAGATTATGTTGTTACACCGAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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