SE2850206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9211
  • Sorghum bicolor
  • SE2850206
  • PIF/harbinger
  • To1
  • chromosome_3:68947093-68947341
  • TAA
  • AGGCCTTGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              -----      -- AGATTTCGGATTTCGGTACTGTAGCACTTTCGTTTGTTTGTGACAAATATTATTCAATTATAGACTAACTAAGATCAAAAGATTCGTCTCGCGATTTC
  AGGCCTTGTTTAGT     TCCGAA  A                                                                                                  
  ||||||||||||||     ||||||  |                                                                                                   
  TCCGGAACAAATCA     GGTTTT  G                                                                                                  
AA              AGTGG      TC TTTTTTAAAAGTTCTAAGGGGCAGTGTAGCTTAGAATGCCGTGTACGTACTTCGTAATTTATATCTGCTTTCGTTTTTGATTAATGTGTCAAATTGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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