SE2850207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9212
  • Sorghum bicolor
  • SE2850207
  • PIF/harbinger
  • To1
  • chromosome_2:73022582-73022830
  • TAA
  • AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CGAAAAA        T   -----  ---  CTGTAGCATTTTCGTTTTTATTTGACAAATATTGTCCAATTATTAACTAACTAGGATCAAAAGATTCGTCTCACGATTTACAG
  AGGCCTTGTTTAGTTT       ATTTCGGA TTC     GC   TA                                                                                   
  ||||||||||||||||       |||||||| |||     ||   ||                                                                                    
  TCCGGAACAAATCAAG       TGAGGCTT AGG     CA   GT                                                                                   
AA                -------        T   TTTTT  AAA  TCTAAGGAGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTGCTTTTGTTTTTGATTAATGTATCAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3