Plant MITE

SE2850215

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9220
Sorghum bicolor
SE2850215
PIF/harbinger
To11
chromosome_1:72281169-72281405
TAA
AGGCCCTGTTTGGTTG

Secondary structure and sequence

TSD TIR

5'

3'

TA   CCC          CACCC           CC    ATCATATCGAATATTTGGACACATGCATGGAGTACTAAAGATAAACTATTTACGAAACTAAAAACACAGCTAGAGAGTA
  AGG   TGTTTGGTTG     GTTAAAGTTTA  GTCC                                                                               
  |||   ||||||||||     |||||||||||  ||||                                                                               A
  TCC   ACAAACCAAC     CAATTTCAAAT  TGTC                                                                               
AA   CCT          CCCAA           --    CATGACATCGTAAAAGCAAAATAAACTGTTAATCACAGGTTAGTACCTGATTAATCCGAGTTTTCTAAGCAGATCGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850215

TAAGGCCCTGTTTGGTTGCACCCGTTAAAGTTTACCGTCCATCATATCGAATATTTGGACACATGCATGGAGTACTAAAGATAAACTATTTACGAAACTAAAAACACAGCTAGAGAGTAATTTGCTAGACGAATCTTTTGAGCCTAATTAGTCCATGATTGGACACTAATTGTCAAATAAAACGAAAATGCTACAGTACCTGTTAAACTTTAACAACCCCAACCAAACATCCCCTAA

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