SE2850218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9223
  • Sorghum bicolor
  • SE2850218
  • PIF/harbinger
  • To36
  • chromosome_1:66244311-66244553
  • TTA
  • AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 AAAATTTTTTTGAGAAA  -  ------     T     TTTC  TTGTATGTGACAAATATTGTTCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACA
  AGGCCTTGTTTAGTTCC                 GG AG      CACTG AGTAC    GT                                                                   
  |||||||||||||||||                 || ||      ||||| |||||    ||                                                                    
  TCCGGAACAAATCAAGG                 TG GT      AAGTT CTAAG    AC                                                                   
AT                 ---------AATAGTTT  G  TTTTAA     -     --AG  AGTGTAGCTTAGAAACTTGTGTACGTACTTCGTGATTTATGTCTGGTTTTATTTTTGATTAATGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3