SE2850224

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9229
  • Sorghum bicolor
  • SE2850224
  • PIF/harbinger
  • To26
  • chromosome_6:44896894-44897143
  • TTA
  • AGGCCTTGTTTAGTTGTCAAAATTTTGGAATTTCGGGTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              -------------        -       A    G         GCACTTTCGTTTTATATTTGACAAATATTGTCCAATCATGCACTAACTAGGCTCAAAAGATTCGTCTCCCAA
  AGGCCTTGTTTAGT             TGTCAAAA TTTTGGA TTTC GGTACTGTA                                                                        
  ||||||||||||||             |||||||| ||||||| |||| |||||||||                                                                         
  TCCGGAACAAATCA             ACGGTTTT AAAATCT AGAG CTGTGTAGC                                                                        
AT              AAGATTTTCCAAA        T       A    G         TTAGAACGCTGTGTACGTACTTCATAATTTATATTTGCTTTTGTTTTTAATTAATGTGTCAAATGGACATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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