SE2850227

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9232
  • Sorghum bicolor
  • SE2850227
  • PIF/harbinger
  • To26
  • chromosome_5:55931731-55931968
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               GG      TT  GGGTTTTGGATA        CTTTCGTTTGTTTGTGGCAAATATTGTCCAATCATAAACTAATTAGGGTCAAAAGATTCATCTCGTGATTTACAGA
  AGGCCTTGTTTAGTT  CAAAAA  TT            CTGTAGCA                                                                            
  |||||||||||||||  ||||||  ||            ||||||||                                                                             
  TCCGGAACAAATCAA  GTTTTT  AA            GTTCTAAG                                                                            
AA               GG      TT  ------------        GGACAGTATAGCTTAGAACGCTGCGTACGTACTTCATAATTTAAATCTGCTTTTGTTTTTGATTAATGTGTTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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