Plant MITE

SE2850229

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9234
Sorghum bicolor
SE2850229
PIF/harbinger
To2
chromosome_2:3115520-3115768
TTA
AGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 C      TT         TTTTCAGATTCCC   CACATCAAATCTTTAGACGCATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGAT
  AGGCCTTGTTTAGTTCC AAAAAA  TTGCAAAAT             CGT                                                                         
  ||||||||||||||||| ||||||  |||||||||             |||                                                                          
  TCCGGAACAAATCAAGG TTTTTT  AACGTTTTA             GTG                                                                         
AT                 -      TT         --TCCTTATCATC   AAAACAAACATAAACTGTTTATAACAGGTTAGTACTTGATTGATCCGAGTTTTCTAAACAGAGCAGTTAAGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850229

TTAGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATTTTTCAGATTCCCCGTCACATCAAATCTTTAGACGCATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGATCGGAATTGACGAGACAAATCTTTTGAGCCTAGTTAGTTCATGATTGGACAATATTTGTCAAATACAAACAAAAGTGCTACTATTCCTATTTTGCAATTTTTTTTGGAACTAAACAAGGCCTTA

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