Plant MITE

SE2850231

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9236
Sorghum bicolor
SE2850231
PIF/harbinger
To4
chromosome_10:48556050-48556300
TTA
AGGTCTTGTTTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

 TT                CCAAAATA           TTCTC    --  TCCATCACATCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGATAAAAGAAATAACTAATTACACAGTTTAT
   AGGTCTTGTTTAGTTT        TTTTGTAAAAT     AGAT  TC                                                                             
   ||||||||||||||||        |||||||||||     ||||  ||                                                                              
   TCCGGAACAAATCAAG        AAAACGTTTTA     TTAT  TT                                                                             
GAT                ATTTAAAA           --TCC    CA  GTAAAAGCAAACATAAACTGTTTATAACAGGCTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850231

TTAGGTCTTGTTTAGTTTCCAAAATATTTTGTAAAATTTCTCAGATTCTCCATCACATCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGATAAAAGAAATAACTAATTACACAGTTTATCTGTAATTTGCGAGACGAATCTTTTGAGCCTAGTTAGTCCATGATCGGACAATATTTGTCAAATACAAACGAAAATGTTACTATTCCTATTTTGCAAAAAAAATTTAGAACTAAACAAGGCCTTAG

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