Plant MITE

SE2830234

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9239
Sorghum bicolor
SE2830234
hAT
Hat20
chromosome_1:61256969-61257763
CTCCCTCC
CATTGGCGGATCCAGGCCTAAGGCCACTAGGGCCAAAGCCCTAGT

Secondary structure and sequence

TSD TIR

5'

3'

CTCCCTCC  T             ----   A   CC            -G -      -------CATGATC   A        -- -     TTT    -       -- C -  - GTTTCTAAAAAAATAATAATTATTATTTTATCAGAGTGCATTTTAACAACTTTCAAGCTAGAAACCAGCCCAAATAGATAAGGAACTGACGCCTCTCTTATTATTTCGGCCTAGTCTTAATCTCAACCCTCTCGCTCTGATGCTCGCTCACTCACCTCACCGCTCGTAGCAGGTGCCCGTTGCCTGTAGTGCCTCATTGTGTCATTGTCCTATGAGTAGGCGACAACCAACGCCTATCAGCTGATGAACTCATCCCTACGTCATGGCCACAAGATGTCTGCTTCATCTGATG
        CA TGGCGGATCCAGG    CCT AGG  ACTAGGGCCAAA  C CCTAGT              CAT TAATCTAG  G TACAC   AATA ATAGTTA  T A TT T                                                                                                                                                                                                                                                                                                    
        || |||||||||||||    ||| |||  ||||||||||||  | ||||||              ||| ||||||||  | |||||   |||| |||||||  | | || |                                                                                                                                                                                                                                                                                                    G
        GT ACCGCCTGGGTCC    GGA TTC  TGATCCCGGTTT  G GGATCG              ATG AGGGAGGT  G TAATT   TTCA AGCAAAA  T G AA T                                                                                                                                                                                                                                                                                                    
CCTCCCTC  C             TAAA   G   --            AA A      CTTTTCAAATTTTG   -        AA A     ---    C       AT - C  A CTTAAGAATAAACTGACTAGGAGAATAAGTTAAAAAAATATGTTTATCATTTTATTTATTTATAATAATTTTATTAAAATAACTGTTTTGTGAAGTATTGTTTTATTTATTATAATATATTTTTAAAATTTATTCTCTTGCCAGTTTATTCTTTAGAATTTTACCTTTTGCTATGAAAGTTACCCAATCTCCCTCATGTGGCATTAGAAATATATACACACCAGGATACCAGAGGCGTATCTACTTAGAATCATAAAATGCGAGTAAAGAAACAGATTCCTATTGGTTATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830234

CTCCCTCCCATTGGCGGATCCAGGCCTAAGGCCACTAGGGCCAAAGCCCTAGTCATGATCCATATAATCTAGGTACACTTTAATAATAGTTATCATTTGTTTCTAAAAAAATAATAATTATTATTTTATCAGAGTGCATTTTAACAACTTTCAAGCTAGAAACCAGCCCAAATAGATAAGGAACTGACGCCTCTCTTATTATTTCGGCCTAGTCTTAATCTCAACCCTCTCGCTCTGATGCTCGCTCACTCACCTCACCGCTCGTAGCAGGTGCCCGTTGCCTGTAGTGCCTCATTGTGTCATTGTCCTATGAGTAGGCGACAACCAACGCCTATCAGCTGATGAACTCATCCCTACGTCATGGCCACAAGATGTCTGCTTCATCTGATGGTGTATTGGTTATCCTTAGACAAAGAAATGAGCGTAAAATACTAAGATTCATCTATGCGGAGACCATAGGACCACACATATATAAAGATTACGGTGTACTCCCTCTAACCCATTGAAAGTATCGTTTTCCATTTTAAGATTTCTTATTTGACCGTTCTCTTATTTAAAATTTTTATATAATATTATTTATTTTGTTATGAAGTGTTTTGTCAATAAAATTATTTTAATAATATTTATTTATTTTACTATTTGTATAAAAAAATTGAATAAGAGGATCAGTCAAATAAGAATTCTAAACGTTAAAAACGACACTTTTAATAGAATGGAGGGAGTAGTTTTAAACTTTTCGCTAGGAGAATTTGGCCCTAGTCTTGAGGAAATCCTGGGTCCGCCACTGCTCCCTCC

Copy Cancel