SE2850236

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9241
  • Sorghum bicolor
  • SE2850236
  • PIF/harbinger
  • To3
  • chromosome_2:67063274-67063522
  • TAA
  • AGGCCTTGTTTAGTTCACTCTGAAAACCAAAAAGTTTTCAAGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CAC  T     CCA          ---------AA      CC     ATCGAATCTTGTGGCACATGCATGAAACATTAAATATAAACAAAAACAAAAACTAATTACACGGTT
  AGGCCTTGTTTAGTT   TC GAAAA   AAAAGTTTTC           GATTTC  GTCAC                                                                  
  |||||||||||||||   || |||||   ||||||||||           ||||||  |||||                                                                  T
  TCCGGAACAAATCAA   AG CTTTT   TTTTCAAAAG           TTAAAG  AAACA                                                                  
AA               ---  -     CAC          CCATGACATCG      -C     AACACTGTTTATAATAGATTAGTACCTGATTGATCCTAGTTTTCTAAGCAGAGCACTAAATGTCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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