SE2850238

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9243
  • Sorghum bicolor
  • SE2850238
  • PIF/harbinger
  • To3
  • chromosome_10:46486176-46486422
  • TAA
  • AGGCCTTGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              TCACCTCGAAATC       T     A    CCC     CATCGAATCTTGTGGCGCATGCATGAAACATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTCTGTAA
  AGGCCTTGTTTAGT             TAAAAAG TTTCA GATT   CGTCA                                                                            
  ||||||||||||||             ||||||| ||||| ||||   |||||                                                                            A
  TCCGGAACAAATCA             ATTTTTT AAAGT CTAA   ACGAT                                                                            
AA              -------------       T     -    --A     GACATCGTGAAAACAAAAATAAACTGTATATAATAGGTTAGTACTTGATTGATCCTAGTTTTCTAAGCAGAGCGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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