Plant MITE

SE2850242

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9247
Sorghum bicolor
SE2850242
PIF/harbinger
To1
chromosome_5:44597086-44597334
TTA
AGGCCTTGTTTAGATGCAAAAAGTTTTTGGATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT      T     G     --A    T   T                GCATTTTCGTCTTTATTTGACAAACATTGTCTAATTATGGAGTAACTAGCCTTAAAAGATTCGTCTCGTAATTTACA
  AGGCCT GTTTA ATGCA   AAAG TTT GGATTTTGATACTGTA                                                                             
  |||||| ||||| |||||   |||| ||| ||||||||||||||||                                                                             G
  TCCGGA CAAAT TATGT   TTTT GGG TTTGAAATGTTCTAAG                                                                             
AT      C     A     GGA    T   T                GGGTAGTATAGCTTAGAACGCTGTGTACGTACTTCATAATTTATATCAATTTTTCTTATTGATTAATGTGTCAAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850242

TTAGGCCTTGTTTAGATGCAAAAAGTTTTTGGATTTTGATACTGTAGCATTTTCGTCTTTATTTGACAAACATTGTCTAATTATGGAGTAACTAGCCTTAAAAGATTCGTCTCGTAATTTACAGGTAAACTGTGTAATTAGTTATTCTTTTTAACTATATTTAATACTTCATGCATGTGTCGCAAGATTCGATATGATGGGGAATCTTGTAAAGTTTTGGGTTTTTAGGTGTATATAAACCAGGCCTTA

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