Plant MITE

SE2810243

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9248
Sorghum bicolor
SE2810243
Tc1/Mariner
St6
chromosome_1:63887629-63887889
TA
TACTCCCTCTGTCCCTGAAAGCTGCAACTTCTAGAGTTGTCCTAAATCAAACTT

Secondary structure and sequence

TSD TIR

5'

3'

                       G              -  -  TA          TTAA                        AAAC    AGATTTATAGTACCAAATTAATACCATTAGATTTATCATTG
TACTCCCTCTGTCCCTGAAAGCT CAACTTCTAGAGTT GT CC  AATCAAACTT    AACTTTGACCAAATTTATAGAAAA    GCTA                                         
||||||||||||||||||||||| |||||||||||||| || ||  ||||||||||    ||||||||||||||||||||||||    ||||                                          
ATGAGGGAGACAGGGACTTTCGA GTTGAGGATCTTAG CA GG  TTAGTTTGAA    TTGAAACTGGTTTAAATATCTTTT    GTAG                                         
                       A              G  C  --          CAAA                        -CTC    TTATAGATACTGTATTTTACTCATAGAATACTTTTATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810243

TACTCCCTCTGTCCCTGAAAGCTGCAACTTCTAGAGTTGTCCTAAATCAAACTTTTAAAACTTTGACCAAATTTATAGAAAAAAACGCTAAGATTTATAGTACCAAATTAATACCATTAGATTTATCATTGAATATATTTTCATAAGATACTCATTTTATGTCATAGATATTGATGCTCTTTTCTATAAATTTGGTCAAAGTTAAACAAGTTTGATTGGCACGGATTCTAGGAGTTGAAGCTTTCAGGGACAGAGGGAGTA

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