Plant MITE

SE2830244

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9249
Sorghum bicolor
SE2830244
hAT
Hat21
chromosome_2:76793849-76794020
TCCGTACT
GTACTCAGGGGCGAATTTAGGGGAGTTCATCGGGGTC

Secondary structure and sequence

TSD TIR

5'

3'

TCC    --T   G           GG   TT    ---        C  ACCTCGACGAAATCTATAAATTCGTTTATAAATTACTGTT
   GTAC   CAG GGCGAATTTAG  GAG  CATC   GGGGTCCG CG                                        
   ||||   ||| |||||||||||  |||  ||||   |||||||| ||                                         
   CATG   GTT CCGCTTAGATC  CTT  GTAG   CCCCAGTA CT                                        
  T    CCT   A           AA   TT    CAA        -  TCCAGTTGAAGTGATACACTATATTAAAAAACATTCAGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830244

TCCGTACTCAGGGGCGAATTTAGGGGAGTTCATCGGGGTCCGCCGACCTCGACGAAATCTATAAATTCGTTTATAAATTACTGTTTGGACTTACAAAAAATTATATCACATAGTGAAGTTGACCTTCATGACCCCAACGATGTTTTCAACTAGATTCGCCATTGTCCGTACT

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