Plant MITE

SE2850250

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9255
Sorghum bicolor
SE2850250
PIF/harbinger
To4
chromosome_3:26488223-26488460
TAA
AGGCCTTGTGTAGTTCACGAATTTTTTTTGGTTTCGCTA

Secondary structure and sequence

TSD TIR

5'

3'

TA         G      A    T      T  T   G   CTGTA    TTTCGGCTTTATTTGATAACTATTATTTAATTATGGACTAACTAGACTCAAAAGATTCATCTCGCAAATTA
  AGGCCTTGT TAGTTC CGAA TTTTTT GG TTC CTA     GCAC                                                                       
  ||||||||| |||||| |||| |||||| || ||| |||     ||||                                                                        
  TCCGGAACA ATCAAG GTTT AAAAAG TC AAG GAT     GTGT                                                                       
AA         A      A    T      T  T   G   ----A    AGCTTAAAACGCCGTGTAAGTACTTCGTAATTTATATCTATTTTTTCTATTCATTAACGTGTCAAATCTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850250

TAAGGCCTTGTGTAGTTCACGAATTTTTTTTGGTTTCGCTACTGTAGCACTTTCGGCTTTATTTGATAACTATTATTTAATTATGGACTAACTAGACTCAAAAGATTCATCTCGCAAATTACATCTAAACTGTGCAATTACTTATCTTTTTTATCTATATTTAATGCTTCATGAATGTGCCGCAAAATTCGATGTGATAGGGAATCTTGAAAAATTTTGAGAACTAAACAAGGCCTAA

Copy Cancel