SE2810252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9257
  • Sorghum bicolor
  • SE2810252
  • Tc1/Mariner
  • St19
  • chromosome_4:59377410-59377759
  • TA
  • TACTCCCTCCGTCCCCAAATACTGCTATTTCTAGCAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
               C                  C   -----------TT   G  AGATTAGTGTGACAAACAAAAGATCATTCTACCCTCAATTAATTTGGGTTCCACCATTTAATCATGCACGTTAAGTCATGGTTCTCTGGTTCCAACGAGCTGCATTTAATGTCAACTGAATAGA
TACTCCCTCCGTCCC AAATACTGCTATTTCTAG AGA             TCA AC                                                                                                                            
||||||||||||||| |||||||||||||||||| |||             ||| ||                                                                                                                             
ATGAGGGAGGCAGGG TTTATGACGATAAAGATC TCT             TTT AT                                                                                                                            
               A                  C   TTTAAAACAGGTG   -  GACGATAAAGATGATCGTATGAGTCAGGTGGTTGGGTAAATTAAGAGGAACCTTGAACGCACCAGGTGTTTGAGTAAATTAAAGAAGATCCCTCATCATGAAACCGCGTACTATTAACAAACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3