SE2830254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9259
  • Sorghum bicolor
  • SE2830254
  • hAT
  • Hat23
  • chromosome_3:44653932-44654399
  • GATATATT
  • GATATATTCAAGGAAAAAATAGCAGGCTATAGCGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
             -AA        A     -------       -------   A  ---     T  ACAGGCTTGCCGCTAAGCTATTTGTATTTTTTCCGCTATCACAACTTTCACCGCTATTACGCGCTATAGTGTCGCTATAATAAATTTTCTCAGTTTGACTCTCAAAACTCCATCTTAGACTAAATTATCATTTATTCTTTACTGCTAATTTTGTATTTTGGACAATGGAGCTTTCA
GATATATTCAAGG   AAAATAGC GGCTA       TAGCGGC       GCT TA   GCGGC GG                                                                                                                                                                                
|||||||||||||   |||||||| |||||       |||||||       ||| ||   ||||| ||                                                                                                                                                                                 
TTATATAGGTTTC   TTTTATCG CCGAT       ATCGCCG       AAA GT   CGATA CG                                                                                                                                                                                
             AAA        C     AACTTTT       TTGAAAA   -  CCT     -  TCGATATCGCCAAGATATCGCCGCGATACTGTCTATCGCAAAAATATTTTTTATGTACTTTTTGTACTCATTAACTACTTTTTCTGTATCATTTATACTTAAACTACATATTTTTATACAAAAATATTTAGATCCATTGTAATGTTTTATGGTTATACTGTAATGTTGTACCAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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