SE2820256

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9261
  • Sorghum bicolor
  • SE2820256
  • Mutator
  • M8
  • chromosome_1:13729917-13730476
  • TTTATTATT
  • TTTTACAATAGTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTATTGACACA         A     ----------------AATCGCCTC   TCGTTTTTGCTAAAATTTTTTTCTTAATTTATTTTGTGGAAGGGTAATAACGTCATCGTATAAGTCCTCTCAAACCCAACCCCTATCATCGGCGGCGACGGGTTCCTTGAACACGCACTGGCAAACACCGGCGGATAGAACCTAAAAAGATTTTAAAAAAAAACTTAAGAACAAGATTTTTATCTAACTAACTATAGTACTTAAATCATATACCCTAGCTACGCTACTTA
               TTTTACAAT GTTGG                         CAA                                                                                                                                                                                                                                      
               ||||||||| |||||                         |||                                                                                                                                                                                                                                       
               AAAATGTTA CAACC                         CAG                                                                                                                                                                                                                                      
TTATTATTTCTTATA         C     CCTCTGCTACTCTTCACTAACCACA   ATATTAGCCACCTGGGTCTTGTACTTTTCGCTACTTTCTGCTACCCTCGTTCCGCTACCCTCCGCTATCCACACAGATACCAGCCACCTGGTATCTGCGGTGGAGCGGAGGGTAGTGGAGATTTTAATACTCCTAATCCTGGGATTTATCTCCCCACCATTAAGAAAAAAGCATAAATAGAAATATTACTTCACATTTTTCCATTTAAGCATTAACATCTTTATTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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