Plant MITE

SE2830260

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9265
Sorghum bicolor
SE2830260
hAT
Hat24
chromosome_1:3800799-3800985
GTCGGCAT
GTCGGCATCTATGTTACAC

Secondary structure and sequence

TSD TIR

5'

3'

        AT   T       ----      T   AGAGGGTGACGTATTCGTATCCGATACTCATCGGATACGCGGATATAGATACTCGGATACACC
  GTCGGC  CTA GTTACAC    GGATAC TCA                                                               
  ||||||  ||| |||||||    |||||| |||                                                                
  CGGCTG  GAT CAATGTG    TGCCTA TGC                                                               
TA      --   T       CTCA      -   TCATAGCCTATGTTATGCATAGCCTATGCGTCTATGCGTGAAAGATTTTTTTGGGTGATTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830260

GTCGGCATCTATGTTACACGGATACTTCAAGAGGGTGACGTATTCGTATCCGATACTCATCGGATACGCGGATATAGATACTCGGATACACCATTTTAGTGGGTTTTTTTAGAAAGTGCGTATCTGCGTATCCGATACGTATTGTATCCGATACTCGTATCCGTACTCGTGTAACTTAGGTCGGCAT

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