Plant MITE

SE2850269

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9274
Sorghum bicolor
SE2850269
PIF/harbinger
To41
chromosome_8:11197544-11197806
TAA
AGGGGCTGTTTGGTTGCTAGCCACAATTTGCCACACTTTACCTTAGGC

Secondary structure and sequence

TSD TIR

5'

3'

TA     C                             -  TT  C           TGACCAACTTGGCAAGTGTTTGGTTCACAACTAAACTTAGGCACGATTCTTTTGGGCTCCACATGTCATAGAGTTA
  AGGGG TGTTTGGTTGCTAGCCACAATTTGCCACA CT  AC TTAGGCAAGTT                                                                            
  ||||| ||||||||||||||||||||||||||||| ||  || |||||||||||                                                                            A
  TCCCC ACAAACCAACGATCGGTGTTAGATGGTGT GA  TG AATCCGTTCAC                                                                            
AA     T                             T  -T  A           ACCGTTCGGTGTTTTTCACACCGATCGTTTAACCAACGGTGTGAAACGGTACGGATTTCCTTAGAACGGTGTGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850269

TAAGGGGCTGTTTGGTTGCTAGCCACAATTTGCCACACTTTACCTTAGGCAAGTTTGACCAACTTGGCAAGTGTTTGGTTCACAACTAAACTTAGGCACGATTCTTTTGGGCTCCACATGTCATAGAGTTAAAAAGTGTGGCAAGATTCCTTTAGGCATGGCAAAGTGTGGCAACCAATTTGCTAGCCACACTTTTTGTGGCTTGCCACACTTGCCTAAAGTTAGTTGTGGTAGATTGTGGCTAGCAACCAAACATCCCCTAA

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