SE2850271

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9276
  • Sorghum bicolor
  • SE2850271
  • PIF/harbinger
  • To2
  • chromosome_3:66442460-66442708
  • CAA
  • GGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA   C          CACCC      CCAAAAAGT    AA      --C    A  TCGAATTTTGCGACACATGCATGGAGCATTAAATATAGACGAAAACAAAAACTAATCACACAGTTTGACTGT
   GGC TTGTTTAGTT     CGAAAT         TTTC  GATTTT   TGTC CA                                                                        
   ||| ||||||||||     ||||||         ||||  ||||||   |||| ||                                                                        A
   CCG AACAAATCAA     GCTTTA         AAAG  CTAAAA   TGCC TC                                                                        
AAC   T          ----T      -------AT    -C      CCA    A  GTAAAAGCAAAAATAAACTGTTTATAATAGGTTAGTACCTGATTGATCTGAGTTTTCTAAGTAGAGCACTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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