SE2830273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9278
  • Sorghum bicolor
  • SE2830273
  • hAT
  • Hat25
  • chromosome_2:12590074-12590575
  • GTCGAGGG
  • GGCCCTGTTCTAAATAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCGAG    -C    C        --      TAGCGGACGCTATAGCGCTATTTAGCGTTTCTGGAAGAGGACTGCTAAGCTATGGAGATTTTAACGCTAAATGATTATTCCCGCTATTAGCAGCTAATAGCGCGCTAATTTCGCTAAATTGGGTTAGTTTAGCGCCGCTATTTGGCCTGGGGATTCATTTTCATGGGCCCAAATAACTTGGAGGCCCAAATAGCAGGGATATGCCCATATGTGATGTATG
      GGCC  TGTT TAAATAGC  GCGCTA                                                                                                                                                                                                                            
      ||||  |||| ||||||||  ||||||                                                                                                                                                                                                                             
      CTGG  ACAA ATTTATCG  CGATTC                                                                                                                                                                                                                            
 GGGAG    TC    A        CA      GGAGAATCGCCGTCGGAGAGATTTTCCGATTCTTTTCGATATAGCGCGATTATCGCCCGATTCGGTAAATCGCCAACTCGTTTTTTATACAGTTTATAGTACATTAAAATGTGTATTATTTCTACTTTTGTAATACTTATGGTTATCACTATCTATAAAGTTTCCCAATGATTGTATAATGTAGTTTCAAGCATCAAGTATGTACTATGTAGTTATTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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