SE2830274

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9279
  • Sorghum bicolor
  • SE2830274
  • hAT
  • Hat23
  • chromosome_2:8842794-8843273
  • GTTGTGAC
  • GTTGTGACCAAAGAAAAAAATAGCGGGCTATAGCTGCTCTGCTGCTTGACAGGCTTGCCGCTAAGC

Secondary structure and sequence

TSD    TIR
5'



3'
             AAA       C      -------    T  TCT   GC  GA   --   -   C    -   TATTTGTATTTTTTCCGCTATCACAACTTTTCACC     TA GCGCTTTAGTGTCGCTAAGTTGCATTTGTTACAATAAATTTCACCGATATTACGCGCTATAGTACCGCTATGATAAATCTTCTCAGTCTGACTCTCAAAACTCTATCTTAGACTAGATTACTATTTATTATTTGCAACTAATTT
GTTGTGACCAAAG   AAAATAG GGGCTA       TAGC GC   GCT  TT  CAG  GCT TGC GCTA AGC                                   GCTAT  C                                                                                                                                                
|||||||||||||   ||||||| ||||||       |||| ||   |||  ||  |||  ||| ||| |||| |||                                   |||||  |                                                                                                                                                 
CAGTGTTGGTTTC   TTTTATC CCCGAT       ATCG CG   TGA  AA  GTC  CGA ACG CGAT TCG                                   GCGAT  A                                                                                                                                                
             AAA       A      AATTTTT    C  --T   AA  AA   CT   T   T    A   ---------------------------------CC     -- CTGTCTATCGCAAAAACATTTTTTATGTATTTTTTATGCTAATTAACTACTTTTTCTGTACCATTTATATTTAAACTACTTATTTTTATACAAAAGCATTGTAATGTTTTATGGTTATACTATTCGAAGTAACAGATTTTATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End