SE2850276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9281
  • Sorghum bicolor
  • SE2850276
  • PIF/harbinger
  • To2
  • chromosome_4:11853372-11853620
  • TGG
  • GGGCCTTGTTTAGTTCCGAAAAATTTTGGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                 G -         G     CGAC    TA ---   TTTC      ATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACCA
  GGGCCTTGTTTAGTTCC A AAAATTTTG GAAAT    ACTG  G   CAC    GTTTGT                                                                   
  ||||||||||||||||| | ||||||||| |||||    ||||  |   |||    ||||||                                                                    
  TCCGGAACAAATCAAGG T TTTTAAAAT TTTTA    AAAG  T   AGG    GGCAGT                                                                   
GG                 G C         G     ---A    -- ATA   ----      GTAGCTTAGAAATCTGCGTACGTACTTCATAATTTATATCTGCTTTTATTTTTGATTAACGTGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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