SE2850281

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9286
  • Sorghum bicolor
  • SE2850281
  • PIF/harbinger
  • To1
  • chromosome_4:58274054-58274302
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CACC       CCAAAAAGT    AA      C    ACATCGAATCTTGCGGCACATGCATAAAGCATTAAGTATAGACGAAAACAAAAACTAATCACACAGTTTGACTGTA
  AGGCCTTGTTTAGTT    CCGAAAT         TTTC  GATTCC TGTC                                                                            
  |||||||||||||||    |||||||         ||||  |||||| ||||                                                                            A
  TCCGGAACAAATCAA    GGCTTTA         AAAG  CTAAGG CATG                                                                            
AA               ----       -------AT    -C      C    ACATCGTGAAAGCAAAAATAAACTGTTTATAATAGGTTAATACCTGATTGATCCGAATTTTCTAAATAGAGCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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