SE2850284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9289
  • Sorghum bicolor
  • SE2850284
  • PIF/harbinger
  • To36
  • chromosome_2:72762071-72762306
  • TGA
  • AGGACTTGTTTAATTCTCAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG   A        A    C       -C     TTTCATCACATCAAATCTTAAAACACATGCATAAAACATTATATATAGATACAAATAATAACTAATTATACAGTTTATTTGTAA
  AGG CTTGTTTA TTCT AAATTTT  AGATT                                                                                    
  ||| |||||||| |||| |||||||  |||||                                                                                    T
  TCC GAACAAAT AAGA TTTAAAA  ATGTT                                                                                    
AG   G        C    T       AA     TTACCTATAGCATCGTAAAAACAAACATAAATTGTTTAAAACAAGTTAGTATCTTATTGATACGAGTTTTCTAAGCAGAGCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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