Plant MITE

SE2810286

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9291
Sorghum bicolor
SE2810286
Tc1/Mariner
St13
chromosome_2:8137193-8137426
TA
CTCCATCCTAAATTATAAAACATTTGACTTTTTTATCTCAAATTTGACCACTCATCTTATTCAAA

Secondary structure and sequence

TSD TIR

5'

3'

TACTCC   C              A  A            AT -    A      CAC  A           -----      ATGCAAACAGAGCTAAATTTAAGTCATTCTTGTAGAACT
      CTC ATCCTAAATTATAA AC TTTGACTTTTTT  C TCAA TTTGAC   TC TCTTATTCAAA     AAATTT                                       
      ||| |||||||||||||| || ||||||||||||  | |||| ||||||   || |||||||||||     ||||||                                        
      GAG TAGGGTTTAATATT TG AAACTGAAAAAA  G GGTT AAATTG   AG AGAATAAGTTT     CACATT                                       
    AT   T              C  C            CT T    C      ATA  C           TTAAA      TTAAAGTGTGAAAAATAACACTGAATCAAATAATTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810286

TACTCCCTCCATCCTAAATTATAAAACATTTGACTTTTTTATCTCAAATTTGACCACTCATCTTATTCAAAAAATTTATGCAAACAGAGCTAAATTTAAGTCATTCTTGTAGAACTTTTATTAATAAACTAAGTCACAATAAAAAGTGTGAAATTTTACACAAATTTTTGAATAAGACGAATAGTTAAACTTGGTGTCAAAAAAGTCAAACGTCTTATAATTTGGGATTGAGTA

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