Plant MITE

SE2820292

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9297
Sorghum bicolor
SE2820292
Mutator
M11
chromosome_9:48712368-48712631
GAACTGGTT
AACTGGTTGGCAACAGATCTAGTGCAAACTCATCTCCCGTACAAACTATGCAAACTCTAATCTGGACCGCATGATGTTAATCCAAGGGGGCGCATGAGAGAGGTGG

Secondary structure and sequence

TSD TIR

5'

3'

G        -      A                     C   A      A                       T      A         G   CAT      GG   --AAGGAG G     TAAAA  G  ATTA
 AACTGGTT GGCAAC GATCTAGTGCAAACTCATCTC CGT CAAACT TGCAAACTCTAATCTGGACCGCA GATGTT ATCCAAGGG GCG   GAGAGA  TGG        G ATTTG     GT TG    
 |||||||| |||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||| ||||||||| |||   ||||||  |||        | |||||     || ||     
 TTGGTCAA CCGTTG CTAGATCACGTTTGAGTAGAG GCA GTTTGA ACGTTTGAGATTAGACCTGGCGT CTACAA TAGGTTCCC CGC   CTCTCT  ACC        C TGAAT     CG GC    
         G      C                     T   C      C                       C      C         G   ---      -A   CAGTAAAA G     --TGG  G  GAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2820292

GAACTGGTTGGCAACAGATCTAGTGCAAACTCATCTCCCGTACAAACTATGCAAACTCTAATCTGGACCGCATGATGTTAATCCAAGGGGGCGCATGAGAGAGGTGGAAGGAGGGATTTGTAAAAGTGTGATTAAGAGCGGGCGGTTAAGTGCAAAATGACCCAATCTCTCCGCGCCCTTGGATCAACATCCTGCGGTCCAGATTAGAGTTTGCACAGTTTGCACGTGAGATGAGTTTGCACTAGATCCGTTGCCGAACTGGTT

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