Plant MITE

SE2850293

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9298
Sorghum bicolor
SE2850293
PIF/harbinger
To1
chromosome_7:7940568-7940816
TTA
AGGCCTTGTTTAGTTCACCCCAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT             T   CCC    AACCAAAAACTTTT     --   CCTATCACATCGAATCTTGCGGCACAATGCATAGAGCATTAAATATAGATGAAAATAAAAACTAATTATACAGTTTG
  AGGCCTTGTTTAG TCA   CAAA              CAAGA  TTC                                                                             
  ||||||||||||| |||   ||||              |||||  |||                                                                             C
  TCCGGAACAAATC AGT   GTTT              CTGTG  ATC                                                                             
AT             T   -TT    ---AAAACCTAAAA     AC   GTGAAAGCAAAAATAAACTGTTTGTAACAGATTAGTACTTCATCGATCCGAATTTTCTAAACAGAGCGCTAAATGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850293

TTAGGCCTTGTTTAGTTCACCCCAAAAACCAAAAACTTTTCAAGATTCCCTATCACATCGAATCTTGCGGCACAATGCATAGAGCATTAAATATAGATGAAAATAAAAACTAATTATACAGTTTGCTTGTAAATCGCGAGACAAATCTTTTAAGCCTAGCTACTTCATGATTAGACAATGTTTGTCAAATAAAAACGAAAGTGCTACAGTGTCAAAATCCAAAATTTGTTTGATCTAAACAAGGCCTTA

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