SE2850294

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9299
  • Sorghum bicolor
  • SE2850294
  • PIF/harbinger
  • To1
  • chromosome_2:70968866-70969102
  • TTA
  • AGGCCTTGTTCAGTTCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          C        TTTT    GAATTT  A      ACTACTTTTGTTTTTATTTGACAAACATTGTTCAATCATGGAGTAACTAGTCTTAAAAGATTCGTCTCGCGATTTACA
  AGGCCTTGTT AGTTCTAA    TTTT      CG CACTGT                                                                              
  |||||||||| ||||||||    ||||      || ||||||                                                                               
  TCCGGAATAA TCAAGATT    AAAA      GT TCTAAG                                                                              
AT          A        TTTT    ------  -      AGGTAGTGTAGCTTAGAACGCCGTGTACGTACCACGTAATTTATATGTATTTTTGTTTTTGATTAACGTGTTAAGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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