SE2850298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9303
  • Sorghum bicolor
  • SE2850298
  • PIF/harbinger
  • To1
  • chromosome_2:2131891-2132139
  • TCA
  • AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                CAAAAAA  T       -  GGTACTGTAGCATTTTCGTTTTTATTTGACAAATATTGTCCAATCATGAACTAACTAGGATCAAAATATTCGTCTCGCGATTTACAGATAA
  AGGCCTTGTTTAGTTT       AT TCGGATT TC                                                                                           
  ||||||||||||||||       || ||||||| ||                                                                                            
  TCCGGAACAAATCAAG       TG GGACTTT GG                                                                                           
AC                -------  -       A  TTTTTCAAAAGTTCTAAGGGATAGTGTAGCTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTGCTTTTGTTTTTGATTAATATGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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