SE2850301

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9306
  • Sorghum bicolor
  • SE2850301
  • PIF/harbinger
  • To20
  • chromosome_7:2307276-2307752
  • TAA
  • AGAGCAACTCCAGCAGGGCCCCTACTCAAGCCCC

Secondary structure and sequence

TSD    TIR
5'



3'
TA                -       ---   C    C  AATAGCT            ------   -T    -  AACATTA -- CC GCAGGGCCCCTACTCCAGACCCCATATTTGGCTGGGCACCCATATTTCTCTCCCAGACCTCATTCCTGTTGGCCCAACAGGGCAGCCCCCATCCTCCATCGTGTGTTCTAGCCCCAGCGCATGCTCCCTCTCTCTTTACCCTTGCATGTGCATGACACC
  AGAGCAACTCCAGCAG GGCCCCT   ACT AAGC CC       AAATATGGGTGC      CCA  GCTA AA       C  T  A                                                                                                                                                               
  |||||||||||||||| |||||||   ||| |||| ||       ||||||||||||      |||  |||| ||       |  |  |                                                                                                                                                               C
  TCTCGTTGAGGTCGTC TCGGGGG   TGA TTCG GG       TTAAACCCACGA      TGA  AACC CG       A  T  G                                                                                                                                                               
AA                A       TTT   -    A  ATAAAAA            GGGGGA   AG    C  ------- GA -- AAAAAACGAAGTCGAGGTTGTCATCGTGGGTTTAAACTCGGGGGTTTGGATAAGGTCTCTCTTACTGTCTTCCCTGGGTGAGCAGTCACAGAAAAAGAAGAAGGAGAAAGAAGAAGGAAACCTGTACCTGTGTTGATCTCGTAGCTCGGCCAATGGCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End