Plant MITE

SE2850312

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9317
Sorghum bicolor
SE2850312
PIF/harbinger
To44
chromosome_2:71996538-71996891
TTA
AGAGCAAC

Secondary structure and sequence

TSD TIR

5'

3'

TT  A        A         --   CAAGTAGTCCATATACATGGAGCCTACATAAGTAGTCCATAGCTATTATTTTTTTTTCACAATGTTCAGCCAACAAAGTAGTCCATAAGGTAGGGTCCACTAGAGATTAAAAATTATTCTTTTCAACCATCTCATCTTTCATGACACAAG
  AG GCAACCTC ATGTATATG  GAC                                                                                                                                                      
  || |||||||| |||||||||  |||                                                                                                                                                      A
  TC CGTTGGTG TTACAAGTC  TTT                                                                                                                                                      
AT  C        -         TC   CATCAGGTATCCCTTATTTTATGAGAGATAGTCGATTGACTTTGTAACACCTCCATCAGGTATATCGTCAGATATTGTTTTCGATGGGTATCGGGATGCCTGATGGGTATTCGTTATTTCTTTATAATAAAAGAGAGAGGTACGAGAGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850312

TTAGAGCAACCTCAATGTATATGGACCAAGTAGTCCATATACATGGAGCCTACATAAGTAGTCCATAGCTATTATTTTTTTTTCACAATGTTCAGCCAACAAAGTAGTCCATAAGGTAGGGTCCACTAGAGATTAAAAATTATTCTTTTCAACCATCTCATCTTTCATGACACAAGAGAGAGAGCATGGAGAGAGAAAATAATATTTCTTTATTGCTTATGGGTAGTCCGTAGGGCTATGGGTAGCTTTTGTTATAGACTGCTATATGGACTACCTCCACAATGTTTCAGTTAGCTGATAGAGAGTATTTTATTCCCTATGGACTACTTTCTCTGAACATTGTGGTTGCCCTTA

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