Plant MITE

SE2810314

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9319
Sorghum bicolor
SE2810314
Tc1/Mariner
St1
chromosome_2:2816694-2816930
TA
TACTCCCTCCGTCCCTAAATAACTGTCGTT

Secondary structure and sequence

TSD TIR

5'

3'

         C       AA   C       ----TACGC  - CCGAGAAACAACTTTAATTATATATATTAAAAAATATTAATATTTATGATACATAATTAGTATCATTAGAAAGATCTT
TACTCCCTC GTCCCTA  TAA TGTCGTT         TT C                                                                              
||||||||| |||||||  ||| |||||||         || |                                                                               
ATGAGGGAG CAGGGAT  ATT ACAGCGG         GC C                                                                              
         A       AA   A       CAACCACAC  A AGTGTTCAAACTGAGCTAAACATATTTTATGTACGTTGTAAATATAGAAATTTATTTAAATAATTTTTTGATCTAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810314

TACTCCCTCCGTCCCTAAATAACTGTCGTTTACGCTTCCCGAGAAACAACTTTAATTATATATATTAAAAAATATTAATATTTATGATACATAATTAGTATCATTAGAAAGATCTTTGAATCTAGTTTTTTAATAAATTTATTTAAAGATATAAATGTTGCATGTATTTTATACAAATCGAGTCAAACTTGTGACACGCACACCAACGGCGACAATTAAATAGGGACAGAGGGAGTA

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