Plant MITE

SE2850315

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9320
Sorghum bicolor
SE2850315
PIF/harbinger
To38
chromosome_5:12870759-12871052
TTA
AGGCCAGTCTCAGTGGAGAGTTTTATATCAT

Secondary structure and sequence

TSD TIR

5'

3'

TT          C      ----------         A    T       --    TGCCACATCATGTGAAATGAAATGAAACTTAAATGAAACACCCACTCTTAATTTCATTCCATGGTTTCATAGGCATTTAATTTCAAGACTCATAGA
  AGGCCAGTCT AGTGGA          GAGTTTTAT TCAT GTTTCCA  ATGT                                                                                                
  |||||||||| ||||||          ||||||||| |||| |||||||  ||||                                                                                                G
  TCCGGTCAGA TCACCT          CTCAAAATA AGTG AATTTAT  GACG                                                                                                
AT          A      TCAAAGTAGC         -    T       CC    ATGTATCCATAAAACCTTCTGTACTGTCACATAAATTCTTCTCTTTCTTCTTTATCCAAAGTAGATCTACTTTGAGAGAACTGTGCTAATGGTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850315

TTAGGCCAGTCTCAGTGGAGAGTTTTATATCATTGTTTCCAATGTTGCCACATCATGTGAAATGAAATGAAACTTAAATGAAACACCCACTCTTAATTTCATTCCATGGTTTCATAGGCATTTAATTTCAAGACTCATAGAGAGTTGGTAATCGTGTCAAGAGAGTTTCATCTAGATGAAACCTATTTCTTCTTTCTCTTCTTAAATACACTGTCATGTCTTCCAAAATACCTATGTAGCAGCCTATTTAATGTGAATAAAACTCCGATGAAACTTCCACTAAGACTGGCCTTA

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