Plant MITE

SE2850318

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9323
Sorghum bicolor
SE2850318
PIF/harbinger
To27
chromosome_1:15257120-15257770
TTA
AGAGCATCTCCAACCATTATGC

Secondary structure and sequence

TSD TIR

5'

3'

TT      T               ATTTGAA   A    -T   AGGCAAATTGCAAACCCCCAAATGAAAATGGCAAGGCTAAAATCGGGTGATCTCCAACCGTTATGCAAAATGCGAAGTCCATCATCTTTTTTTCCCGGAAATTTTGTTTCGCGGCACTCGTTCCTGCGCGGCCAATCGATCCCGCGCCAAACAGCCCGCCGTCGTGAGCTGCGCAGTTCGTCGTTCCCGTTCGCAGTACCGATCGCATTGATGAAGAAGGCGTACCTGGCCGGCGTTGATGAGGAAGGCGTCGTAGATTCGTCCTATCGCGCGTTGCGTCGTCCTA
  AGAGCA CTCCAACCATTATGC       GTT TGCA  TTT                                                                                                                                                                                                                                                                                              
  |||||| |||||||||||||||       ||| ||||  |||                                                                                                                                                                                                                                                                                               
  TCTCGT GAGGTTGGTAATACG       TTT ACTT  ACC                                                                                                                                                                                                                                                                                              
AT      T               -------   -    GA   GTAAATGGTTTTACGTATTTTGAGGTTTTTTTTGGGGAGGTTAGCAATACGTAAACCTGAAACGTAAAATGTATCGATACGTAAACCTCCCCCTTTGAACCGTATATACGGTTTCCTCAGGCCGATACGTTTATCTCTAGTGCCCTAAGAGCCAAGGTGGAGCGCCCGAAAAAAGAAGGGAAGCGCGCCAAAGGGAAGCGCGGCGGTGGTGAAGCGCGCTATCCTCTTCGTAGCGCGCAGGAGGAAGCGGTCGAAGCGCGCGCGCAAACCTGCTTCGTCGCGTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850318

TTAGAGCATCTCCAACCATTATGCATTTGAAGTTATGCATTTTAGGCAAATTGCAAACCCCCAAATGAAAATGGCAAGGCTAAAATCGGGTGATCTCCAACCGTTATGCAAAATGCGAAGTCCATCATCTTTTTTTCCCGGAAATTTTGTTTCGCGGCACTCGTTCCTGCGCGGCCAATCGATCCCGCGCCAAACAGCCCGCCGTCGTGAGCTGCGCAGTTCGTCGTTCCCGTTCGCAGTACCGATCGCATTGATGAAGAAGGCGTACCTGGCCGGCGTTGATGAGGAAGGCGTCGTAGATTCGTCCTATCGCGCGTTGCGTCGTCCTATTGTGCGCTGCTTCGTCCAAACGCGCGCGCGAAGCTGGCGAAGGAGGACGCGCGATGCTTCTCCTATCGCGCGAAGTGGTGGCGGCGCGAAGGGAAACCGCGCGAAGGGAAGAAAAAAGCCCGCGAGGTGGAACCGAGAATCCCGTGATCTCTATTTGCATAGCCGGACTCCTTTGGCATATATGCCAAGTTTCCCCCTCCAAATGCATAGCTATGTAAAATGCAAAGTCCAAATGCATAACGATTGGAGGGGTTTTTTTTGGAGTTTTATGCATTTTGGTAAATGCCAAGTTCATTTGCATAATGGTTGGAGTTGCTCTTA

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