SE2810322

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9327
  • Sorghum bicolor
  • SE2810322
  • Tc1/Mariner
  • St9
  • chromosome_1:7526484-7526746
  • N.A.
  • ACGTACTCCATCCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAACATCTCAAGTTTGACCAAATTTATATGGTAGGATAATAACAGTTATGATACCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
A  GTA                             A            C                       T     T  T     A    -CAG        C   CT    GTCATTAGGTTCTTCATTA
 AC   CTCCATCCCAAATTATAAGTCATTCCAAG ATCTTGGAGAGT AAAACATCTCAAGTTTGACCAAA TTATA GG AGGAT ATAA    TTATGATA CAA  AAGT                   
 ||   ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||    |||||||| |||  ||||                   A
 TG   GAGGTAGGGTTTAATATTCAGTAAGGTTC TAGAGCCTCTCA TTTTGTAGAGTTCAAACTGGTTT AATAT CT TTTTA TGTT    AATACTGT GTT  TATC                   
A  AGG                             C            A                       T     -  T     A    TCTA        A   --    TATATGATACTTTTATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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