SE2850324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9329
  • Sorghum bicolor
  • SE2850324
  • PIF/harbinger
  • To1
  • chromosome_5:6503366-6503614
  • TTA
  • AGGGCTTGTTTAGATAAAAAAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G         ---  -AA       TTTT       G       A CATTTTTGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACAA
  AGG CTTGTTTAG   AT   AAAAACT    GGATTTT ACACTGT G                                                                             
  ||| |||||||||   ||   |||||||    ||||||| ||||||| |                                                                              
  TCC GAACAAGTC   TG   TTTTTGG    TTTGAAA GTTCTAA G                                                                             
AT   G         AAA  GGG       --TT       A       - AGGCAGTGTAGCTTAGAACACCGTGTATGTAACTTGTAATTTATATCTATTTTTATTTTTGATTAATGTGACAAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3