SE2850328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9333
  • Sorghum bicolor
  • SE2850328
  • PIF/harbinger
  • To2
  • chromosome_3:6723416-6724012
  • TTA
  • AGGCCCTGTTTAGTTGCCG

Secondary structure and sequence

TSD    TIR
5'



3'
TT     C         G   -------CCCA           ----   -A  C                A          AC             AAA         --     A        A -   A    -C      C           AC       CTC   ----------------AA     CT  A   CTACAGTAACCCACATATGCTAACGACAGATTAATTATGCTTAATAAATTTGTCTTACAGTTTCCTGACGAGCTATGTAATTTGTTTTTTTATTAGTTTCTAAAAACCCCTCCCG
  AGGCC TGTTTAGTT CCG           AAATTTTTTCA    TCC  TC CATCGAATCTTTAGAC CATGCATGAA  ATTAAATGTAGAT   AAAATAAAA  TAATT CACAGTTT G TTG GAAT  ACGAGA GAATCTTTTAA  CTAGTTA   CAT                  TTAGC  TA GTG                                                                                                                   
  ||||| ||||||||| |||           |||||||||||    |||  || |||||||||||||||| ||||||||||  |||||||||||||   |||||||||  ||||| |||||||| | ||| ||||  |||||| |||||||||||  |||||||   |||                  |||||  || |||                                                                                                                   A
  TCCGG ACAAATCAA GGT           TTTAAAAAAGT    AGG  AG GTAGTTTAGAAATCTG GTACGTATTT  TAATTTATATCTA   TTTTATTTT  ATTAA GTGTCAAA C GGC CTTA  TGCTCT CTTAGAAAATT  GATCAAT   GTA                  TTTAT  TT TGT                                                                                                                   
AT     A         G   CTTTTTAAACG           CTAA   GC  T                C          CA             --C         TG     C        - T   -    AC      A           CA       CAT   CAAACCTATTATAAACAG     -G  -   TTTCACCATTATAAAGATAAAACGTTTTACAAAACATTGATTTGTTCCGGATTCCCGGACAAATCTAACCTCTACTTTTAAAAAATCCACAGTGTAGCCTACACAGCCTTCCTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End