Plant MITE

SE2850330

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9335
Sorghum bicolor
SE2850330
PIF/harbinger
To1
chromosome_4:59873434-59873682
TTA
AGGCCTTGTTTAGATCCAAAAACTTTTTGGATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT               ----          TTT       GACACTGTA    TTTC   TTTATTTGACAAACATTATCCAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACAGGTAAAC
  AGGCCTTGTTTAGAT    CCAAAAACTT   GGATTTT         GCAC    GTT                                                                         
  |||||||||||||||    ||||||||||   |||||||         ||||    |||                                                                          
  TCCGGAACAAATCTA    GGTTTTTGGG   TTTGAAA         TGTT    CTA                                                                         
AT               CGTG          --T       ---------    ----   AGGGGTAGTGTAGCTTAGAACGCCGTGTACGTATCTTGTAATTTATATCTATTTTTTCTATTGATTAACGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850330

TTAGGCCTTGTTTAGATCCAAAAACTTTTTGGATTTTGACACTGTAGCACTTTCGTTTTTATTTGACAAACATTATCCAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACAGGTAAACTGTGCAATTAGTTATCTTTTTTATCTATATTTAATGTTCTATGCATGTGCCGCAAGATTCGATGTGATGGGGAATCTTGTAAAGTTTTGGGTTTTTGGGTGCATCTAAACAAGGCCTTA

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