SE2850331

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9336
  • Sorghum bicolor
  • SE2850331
  • PIF/harbinger
  • To4
  • chromosome_10:5568848-5569084
  • TAA
  • AGGCCTTGTTTAGTTCTGAAAATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               C G          GGTTTT G     GTAGCACTTTC      ATTTGGCAATTATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACAGGCA
  AGGCCTTGTTTAGTT T AAAATTTTTT      G CTAGT           GATTGT                                                                   
  ||||||||||||||| | ||||||||||      | |||||           ||||||                                                                   A
  TCCGGAACAAATCAA G TTTTAAAAAG      T TCTAA           GGGGTA                                                                   
AA               A G          ------ -     -----------      GTATAGCTTAGAAATCTGCGTACGTACTCTGTAATTTATATCTATTTTTTAATTGATTAGCGTGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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