SE2850335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9340
  • Sorghum bicolor
  • SE2850335
  • PIF/harbinger
  • To2
  • chromosome_2:59074877-59075123
  • TTA
  • AGGCCTTGTTTAGTTCCTAAAAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               CC           ACAAATTTTTTC      --  CGTCACATCAAATCTTTAAACATATGCATAGAGTATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGGTCGG
  AGGCCTTGTTTAGTT  TAAAAAAATTT            AGATTT  TC                                                                               
  |||||||||||||||  |||||||||||            ||||||  ||                                                                                
  TCCGGAACAAATCAA  ATTTTTTTAAA            CTTTTA  TG                                                                               
AT               --           -----------C      GC  TAACACGTGAAAGCAAACATAAACTGTTTATAACAGGTTAATACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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