SE2850337

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9342
  • Sorghum bicolor
  • SE2850337
  • PIF/harbinger
  • To1
  • chromosome_5:48935969-48936217
  • TAA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C           ACACCCAAAAACCCAAAACTTTA        CTCATCACATCGAATCTTGCGGCACATGCATGGAGCATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTGTCTGTAAATCGC
  AGG CTTGTTTAGAT                       CAAGATTC                                                                                        
  ||| |||||||||||                       ||||||||                                                                                         
  TCC GAACAAATCTA                       GGTTTTAG                                                                                        
AA   C           -----------------------        AAAAACCTAAAACTGTAACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTTCCTCATTGATCCAAATTTTCTAAGCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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