SE2850339

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9344
  • Sorghum bicolor
  • SE2850339
  • PIF/harbinger
  • To1
  • chromosome_5:49884475-49884721
  • TTA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               CT      -- TTTCGGTTTTCGAAACTGTAGCACTTTCGTTTTTATTTGACAAACATTATCCAATAATAGAGTAACTAGGTTTAAAAGATTCATCTCGTGATTTAC
  AGGCCTTGTTTAGTT  GAAAAC  T                                                                                                
  |||||||||||||||  ||||||  |                                                                                                A
  TCCGGAACAAATCAA  TGGGTT  T                                                                                                
AT               AT      TT GGTTTTAGAAAAGTTCTAAGGGACAGTGTAGCTTAGAACGCCGTATACATCTCGTAATTTATATCTGCTTTTATTTTTGATTAACGTGTCAAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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