SE2850340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9345
  • Sorghum bicolor
  • SE2850340
  • PIF/harbinger
  • To1
  • chromosome_1:59988856-59989095
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ACAAAA       AGATTCTCCGTCACATCGAATCTTTCGTCGCATGCATAGAGTATTAAATATAGACGAAAATAAAAACTAATTACACAGTTTATCTGTAATTT
  AGGCCTTGTTTAGTTC      ATTTTCA                                                                                            
  ||||||||||||||||      |||||||                                                                                             
  TCCGGAACAAATCAAG      CGGTTTT                                                                                            
AT                ------       AAAAACCAAAAACCGATGACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTATCTCATTGATCCGAGTTTTCTAAGTAGAGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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