SE2850342

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9347
  • Sorghum bicolor
  • SE2850342
  • PIF/harbinger
  • To48
  • chromosome_6:42164215-42164547
  • TAA
  • AGGGGCTGTTTGGTTTACCGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  C   ACCGTTC        T   CTGC          ACACCGA -  TAC   T     TTCTGGCCATGTGCGCCATGCCATAAAGTGTGGCTGCCATCATCCTGTGGCTGCTGTTTGCTTTTGGTTAATTTTGTGGCTGCCGTAGCTGTTT
  AGGGGCTGTTTGGTTTAC GCC       GCCATGCC CAC    GGCAGCCACA       G GC   TGT TGGTT                                                                                              
  |||||||||||||||||| |||       |||||||| |||    ||||||||||       | ||   ||| |||||                                                                                              C
  TCCCCGACAAACCAAGTG TGG       CGGTGCGG GTG    TACCGGGACG       G CG   AAA ACGTA                                                                                              
AA                  A   CTTTGAA        T   ----          ------- T  ---   -     CCGACGGTACGATGTCACTACTCGTGGTCGCGGTTTGAACACCGCACACACCGCCACTTAAACCGGTGGTGTGACCACCGCTCAAAAAAATGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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