SE2850346

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9351
  • Sorghum bicolor
  • SE2850346
  • PIF/harbinger
  • To50
  • chromosome_2:5319725-5320017
  • TAA
  • AGAGCAACTCCAAGAGACTCTCTAAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      A         --------------     C      -----C    -  AATGCTAGGAATAGAGATTTTGGTAAAAAATTACCCTCCAACAGCTTGTCTAAATGGTTATGCAAATATAGTCATATTCTATTTCAGATTTTTCGCTAG
  AGAGCA CTCCAAGAG              ACTCT TAAATC      TTCC TA                                                                                                   
  |||||| |||||||||              ||||| ||||||      |||| ||                                                                                                   C
  TCTCGT GAGGTTCTC              TGAGA ATTTAG      ATCT TT                                                                                                   
AA      A         AGAAACGTTTAGAG     A      TAGTAA    C  GGTAAAGATATTTTTAGCGAAAGATATAAAAAAATGAGAGATTGTCGAAAAGATAAAGAGCATACGTGAGATCTCTTGGTAAGAGCAGAAGATAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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